PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678431534
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family DBB
Protein Properties Length: 296aa    MW: 31902.3 Da    PI: 6.6482
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678431534genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.2e-06447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ ++  e++  C  ++  lC dC ++ H        H++vpl
  678431534  4 QCNVCDAAEANVLCCADEAALCWDCDQKVHAAnklaskHQRVPL 47
               7******99*********************66899999999986 PP

2zf-B_box30.38.4e-105294137
   zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
               s+++ C+ +++    +fC +++ llC++C +++H+       H
  678431534 52 SQMPLCDICKDTVGYFFCLEDRALLCRNCDVAIHNVnplvsaH 94
               6899*******99*********************535555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000215.17E-8347No hitNo description
SMARTSM003361.3E-10447IPR000315B-box-type zinc finger
PfamPF006434.4E-5447IPR000315B-box-type zinc finger
SMARTSM003363.6E-155299IPR000315B-box-type zinc finger
PROSITE profilePS501199.575299IPR000315B-box-type zinc finger
PfamPF006432.9E-75395IPR000315B-box-type zinc finger
CDDcd000213.28E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKIQCNVCDA AEANVLCCAD EAALCWDCDQ KVHAANKLAS KHQRVPLSNS SSQMPLCDIC  60
KDTVGYFFCL EDRALLCRNC DVAIHNVNPL VSAHQRFLLT GVKVGAEGAE SRPSSTPGNL  120
NSPSNGKDFV QQACTAPRRT TPALPEAHYQ PGRPEGLSSS RLTFSGGSAT GSASQWSLDE  180
FLTLSDPNPN FYITDNGNGS SKCDSGKLGG DSDNSQRAAD AETESDDCIG QVPDSHCTVP  240
QIPSPPTASG LYWPKTHQIF GGSSMFVPDF GSSPLRDSPN HHHQPRFRSS KRRRNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098187.11e-117PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM23e-84BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A068UCQ51e-110A0A068UCQ5_COFCA; Uncharacterized protein
STRINGSolyc07g062160.2.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-80light-regulated zinc finger protein 1